Invasive Pneumococcal Disease Surveillance, 1 October to 31 December 2016

This quarterly report provides a summary of invasive pneumococcal disease notifications in Australia during the fourth quarter of 2016.

Page last updated: 30 March 2017

Kate Pennington and the Enhanced Invasive Pneumococcal Disease Surveillance Working Group, for the Communicable Diseases Network Australia


Summary


The number of notified cases of invasive pneumococcal disease (IPD) in the 4th quarter of 2016 (n = 389) was less than the previous quarter (n = 643), but more than the number of notified cases in the 4th quarter of 2015 (n = 314). Overall, the decline in disease due to the serotypes targeted by the 13-valent pneumococcal conjugate vaccine (13vPCV) has been maintained across all age groups, since the 13vPCV replaced the 7-valent pneumococcal conjugate vaccine (7vPCV) in the childhood immunisation program from July 2011 (Figure 1).


Figure 1: Notifications of invasive pneumococcal disease, Australia, 2002 to 2016, year and quarter, by vaccine serotype group


bar chart. text description follows.

NIP = National Immunisation Program

Text version of Figure 1 (TXT 1 KB)

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Key points


In the 4th quarter of 2016, there were 389 cases of IPD reported to the National Notifiable Diseases Surveillance System (NNDSS). This represented a 40% decrease compared with the 3rd quarter of 2016 (n = 643) and a 23% increase when compared with the same period in 2015 (n = 314) (Table 1).


Table 1: Notified cases of invasive pneumococcal disease, Australia, 1 October to 31 December 2016, by Indigenous status, serotype completeness and state or territory
Indigenous status ACT NSW NT Qld SA Tas. Vic. WA Total 4th qtr 2016 Total 3rd qtr 2016 Total 4th qtr 2015 Year to date 2016

* Indigenous status completeness is defined as the reporting of a known Indigenous status, excluding the reporting of not stated or unknown Indigenous status.

† Targeted groups for follow-up by almost all jurisdictions and public health units are cases aged less than 5 years and 50 years or over.

‡ Serotype completeness is the proportion of all cases of invasive pneumococcal disease that were reported with a serotype or reported as non-typable. Serotype incompleteness may include when no isolate was available as diagnosis was by polymerase chain reaction and no molecular typing was attempted or was not possible due to insufficient genetic material; the isolate was not referred to the reference laboratory or was not viable; typing was pending at the time of reporting, or no serotype was reported by the notifying jurisdiction to the National Notifiable Diseases Surveillance System.

Indigenous 0 4 13 6 2 0 1 16 42 74 53 174
Non-Indigenous 5 87 3 50 33 15 69 30 292 509 233 1,314
Not stated / Unknown 0 25 0 0 1 0 29 0 55 60 28 167
Total 5 116 16 56 36 15 99 46 389 643 314 1,655
Indigenous status completeness* (%) 100 78 100 100 97 100 71 100 86 91 91 90
Indigenous status completeness in targeted groups * (%) 100 86 100 100 96 92 86 100 91 97 100 96
Serotype completeness (%) 100 81 94 93 61 93 93 96 87 93 96 92

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For the 2016 calendar year, there were 1,655 notified cases, which was 10% higher when compared with 2015 (n = 1,498). In the 4th quarter of 2016 the most common pneumococcal serotypes causing IPD were 3 (11.3%), 19A (8.2%), 9N (8.0%) and 22F (7.2%) (Table 2). For the reporting quarter and 2016 calendar year, serotypes 3, 19A, 9N and 22F were the most common serotypes, which together accounted for 32% of annual cases (523/1,655).

Table 2: Distribution of serotypes causing invasive pneumococcal disease in notified cases, Australia, 1 October to 31 December 2016, by age group
Serotype Vaccine type Age groups Serotype total
Under 5 years 5–64 years Over 65 years

* Serotypes that only occur in less than 5 cases per quarter are grouped as 'Other' and include 'non-typable' isolates this quarter.

† 'Serotype unknown' includes those serotypes reported as 'no isolate', 'not referred', 'not viable', 'typing pending' and 'untyped'.

19F 7vPCV 2 9 7 18
4 7vPCV 6 6
3 13vPCV non-7vPCV 9 16 19 44
19A 13vPCV non-7vPCV 8 14 10 32
7F 13vPCV non-7vPCV 11 1 12
9N 23vPPV non-13vPCV 1 16 14 31
22F 23vPPV non-13vPCV 1 17 10 28
33F 23vPPV non-13vPCV 3 5 6 14
11A 23vPPV non-13vPCV 1 6 5 12
8 23vPPV non-13vPCV 6 4 10
23A Non-vaccine type 1 7 15 23
23B Non-vaccine type 2 12 3 17
6C Non-vaccine type 5 9 14
35B Non-vaccine type 5 7 12
15A Non-vaccine type 2 3 7 12
15C Non-vaccine type 3 5 1 9
16F Non-vaccine type 1 3 1 5
31 Non-vaccine type 3 2 5
Unknown 14 25 12 51
Other 5 18 11 34
Total 53 192 144 389

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In non-Indigenous Australians this quarter, the number of notified cases was highest in children aged less than 5 years and older adult age groups, especially those aged 60 years or over (Table 3). In Indigenous Australians, cases were highest in children aged less than 5 years and in the 40–44 years age group. The proportion of cases reported as Indigenous this quarter (11%; 42/389) was lower compared with what was observed in the 4th quarter of 2015 (17%; 53/314), and similar to the proportion reported in the 3rd quarter of 2016 (12%; 74/643).


Table 3: Notified cases of invasive pneumococcal disease, Australia, 1 October to 31 December 2016, by Indigenous status and age group
Age group Indigenous status Total
Indigenous Non-Indigenous Not reported*
* Not reported is defined as not stated, blank or unknown Indigenous status.
0–4 6 46 1 53
5–9 2 5 4 11
10–14 1 3 1 5
15–19 5 2 2 9
20–24 1 1 1 3
25–29 1 1 3 5
30–34 6 3 9
35–39 3 7 4 14
40–44 9 9 6 24
45–49 3 12 7 22
50–54 1 20 3 24
55–59 4 23 3 30
60–64 2 31 3 36
69–69 2 25 6 33
70–74 1 27 5 33
75–79 19 4 23
80–84 19 19
85+ 1 35 36
Total 42 291 56 389

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In children aged less than 5 years, there were 53 cases of IPD reported, representing 14% of all cases reported in this quarter. The proportion of cases notified in this age group was similar in this reporting period when compared with the 4th quarter of 2015 (13%; 40/314). Of those cases with a known serotype, 54% (21/39) were due to a serotype included in the 13vPCV compared with 22% (36/40) of cases in the 4th quarter of 2015 (Figure 2). Serotypes 3 and 19A were the most common serotypes affecting this age group in this quarter, noting that both of these serotypes are included in the 13vPCV (Table 2).


Figure 2: Notifications and annual rates* of invasive pneumococcal disease in children aged less than 5 years, Australia, 2007 to 2016, by vaccine serotype group


bar and line chart. text description follows.

* Annual rates are shown on the 2nd quarter.

Text version of Figure 2 (TXT 1 KB)

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In the 4th quarter of 2016, there were 13 cases reported in fully vaccinated children aged less than 5 years who were considered to be 13vPCV failures. Serotype 3 (n=4) was the most common serotype associated with 13vPCV failure reported this quarter (n=7), followed by serotype 19A (n=4) (Table 4).


Table 4: Characteristics of 13vPCV failures in children aged less than 5 years, Australia, 1 October to 31 December 2016
Age Indigenous status Serotype Clinical category Risk factor/s
10 months Non-Indigenous 3 Pneumonia Childcare attendee
1 year Non-Indigenous 19A Bacteraemia No data available
1 year Non-Indigenous 3 Pneumonia No data available
1 year Non-Indigenous 19A Pneumonia Childcare attendee
2 years Non-Indigenous 19F Bacteraemia No risk factor identified
2 years Indigenous 3 Pneumonia Other
2 years Non-Indigenous 14 Pneumonia and other (other sterile site) Childcare attendee
2 years Non-Indigenous 19A Pneumonia Other
2 years Non-Indigenous 3 Pneumonia Childcare attendee
3 years Non-Indigenous 3 Pneumonia and other (pleural empyema) Childcare attendee
3 years Non-Indigenous 19A Pneumonia Other
3 years Non-Indigenous 3 Pneumonia No data available
4 years Non-Indigenous 3 Meningitis Childcare attendee

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Among Indigenous Australians aged 50 years or over, there were 11 cases of IPD reported this quarter. Of those cases with a reported serotype, whilst no particular serotype was dominant, 80% (8/10) were due to a serotype included in the 23-valent pneumococcal polysaccharide vaccine (23vPPV) (Figure 3). The number of notified cases of IPD in this age group were less than half of the number reported in the previous quarter (n=26) and the 4th quarter of 2015 (n=23). Compared with the previous quarter, the proportion of cases in this population group that were due to serotypes included in the 23vPPV increased markedly from 63% to 80% among cases with a known serotype.


Figure 3: Notifications and annual rates* of all invasive pneumococcal disease in Indigenous Australians aged 50 years or over, Australia, 2007 to 2016, by vaccine serotype group


line and bar chart. text description follows.

* Annual rates are shown on the 2nd quarter.

Text version of Figure 3 (TXT 1 KB)

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Among non-Indigenous Australians* aged 65 years or over there were 140 cases of IPD reported this quarter. The number of notified cases of IPD in this age group decreased by 40% when compared with the previous quarter (n=232) but was 25% higher than the number reported in the 4th quarter of 2015 (n=112). Of those cases with a reported serotype, 63% (80/128) were due to a serotype included in the 23vPPV (Figure 4), which represented an increase of 50% when compared with the previous quarter (114/227). For this quarter, serotypes 3 (n=18), 23A (n=15) and 9N (n=14) were the predominant serotypes for this population group, noting that serotype 23A is not included in the 23vPPV.


Figure 4: Notifications and annual rates* of all invasive pneumococcal disease in non-indigenous Australians aged 65 years or over, Australia, 2007 to 2016, by vaccine serotype group


line and bar chart. text description follows.

* Annual rates are shown on quarter 2.


† Non-Indigenous Australians includes cases reported with as non-Indigenous, not stated, blank or unknown.

Text version of Figure 4 (TXT 1 KB)

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During this quarter there were 18 deaths attributed to a variety of IPD serotypes, with serotypes 3 (n=6) and 35B (n=3) predominant. Almost all of the reported deaths (17/18) occurred in non-Indigenous Australians. The median age of those who died was 71 years (range 0 to 97 years). Two deaths were reported in children aged less than 5 years, which were associated with serotypes 3 and 10A.


Notes


The data in this report are provisional and subject to change as laboratory results and additional case information become available. More detailed data analysis of IPD in Australia and surveillance methodology are described in the IPD annual report series published in Communicable Diseases Intelligence.

In Australia, pneumococcal vaccination is recommended as part of routine immunisation for children, individuals with specific underlying conditions associated with increased risk of IPD and older Australians. More information on the scheduling of the pneumococcal vaccination can be found on the Immunise Australia Program website (www.immunise.health.gov.au).


In this report, a 'vaccine failure' is where a fully vaccinated child is diagnosed with IPD due to a serotype covered by the administered vaccine. 'Fully vaccinated' describes cases that have completed the primary course of the relevant vaccine(s) required for their age according to the most recent edition of The Australian Immunisation Handbook, at least 2 weeks prior to disease onset with at least 28 days between doses of vaccine. NB: A young child who has had all the required doses for their age but is not old enough to have completed the primary course would not be classified as fully vaccinated.


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There are 3 pneumococcal vaccines available in Australia, each targeting multiple serotypes (Table 5). Note that in this report serotype analysis is generally grouped according to vaccine composition.


Table 5: Streptococcus pneumoniae serotypes targeted by pneumococcal vaccines
Serotypes 7- valent pneumococcal conjugate vaccine (7vPCV) 10-valent pneumococcal conjugate vaccine (10vPCV) 13-valent pneumococcal conjugate vaccine (13vPCV) 23-valent pneumococcal polysaccharide vaccine (23vPPV)
1 yes yes yes
2 yes
3 yes yes
4 yes yes yes yes
5 yes yes yes
6A yes
6B yes yes yes yes
7F yes yes yes
8 yes
9N yes
9V yes yes yes yes
10A yes
11A yes
12F yes
14 yes yes yes yes
15B yes
17F yes
18C yes yes yes yes
19A yes yes
19F yes yes yes yes
20 yes
22F yes
23F yes yes yes yes
33F yes

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Follow-up of all notified cases of IPD is undertaken in all states and territories except New South Wales and Victoria who conduct targeted follow-up of notified cases aged under 5 years, and 50 years or over for enhanced data. Follow-up of notified cases of IPD in Queensland is undertaken in all areas except Metro South and Gold Coast Public Health Units who conduct targeted follow-up of notified cases for those aged under 5 years only.


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Acknowledgements

Report prepared with the assistance of Mr Mark Trungove and Ms Rachael Corvisy on behalf of the Enhanced Invasive Pneumococcal Disease Surveillance Working Group.


Enhanced Invasive Pneumococcal Disease Surveillance Working Group contributors to this report include (in alphabetical order): Frank Beard (NCIRS), Heather Cook (NT and secretariat), Lucinda Franklin (Vic.), Carolien Giele (WA), Robin Gilmour (NSW), Michelle Harlock (Tas.), Sanjay Jayasinghe (NCIRS), Vicki Krause (Chair), Kerryn Lodo (Tas.), Shahin Oftadeh (Centre for Infectious Diseases and Microbiology– Public Health, Westmead Hospital), Sue Reid (ACT), Vitali Sintchenko (Centre for Infectious Diseases and Microbiology– Public Health, Westmead Hospital), Helen Smith (Queensland Health Forensic and Scientific Services), Janet Strachan (Microbiological Diagnostic Unit, University of Melbourne), Hannah Vogt (SA), Angela Wakefield (Qld).


Author details


Corresponding author: MS Kate Pennington, Vaccine Preventable Diseases Surveillance Section, Office of Health Protection, Australian Government Department of Health, GPO Box 9484, MDP 14, Canberra, ACT 2601. Telephone: +61 2 6289 2725. Facsimile: +61 2 6289 1070. Email: vpds@health.gov.au

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Footnote:

* Non-Indigenous Australians includes cases reported as non-Indigenous, not stated, blank or unknown.

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